@article{geyer-constrained, author = "Charles James Geyer", year = "1991", title = "Constrained Maximum Likelihood Exemplified by Isotonic Convex Logistic Regression", journal = "Journal of the American Statistical Association", volume = "86", pages = "717--724", doi = "10.1080/01621459.1991.10475100", } @article{geyer-moller, author = "Charles James Geyer and Jesper M{\o}ller", year = "1994", title = "Simulation Procedures and Likelihood Inference for Spatial Point Processes", journal = "Scandinavian Journal of Statistics", volume = "21", pages = "359--373", url = "http://www.jstor.org/stable/4616323", } @article{geyer-constrained-asymptotics, author = "Charles James Geyer", TITLE = {On the asymptotics of constrained {$M$}-estimation}, JOURNAL = {Annals of Statistics}, VOLUME = {22}, YEAR = {1994}, NUMBER = {4}, PAGES = {1993--2010}, doi = "10.1214/aos/1176325768", } @article{geyer-gdor, author = "Charles James Geyer", YEAR = {2009}, TITLE = {Likelihood inference in exponential families and directions of recession}, JOURNAL = {Electronic Journal of Statistics}, VOLUME = {3}, PAGES = {259--289}, DOI = {10.1214/08-EJS349}, } @book{barndorff-nielsen, author = "Ole E. Barndorff-Nielsen", year = "1978", title = "Information and Exponential Families", publisher = "Wiley", address = "Chichester, England", } @misc{notes-5421-expfam-i, author = "Charles James Geyer", year = "2020", title = "Stat 5421 Lecture Notes: Exponential Families, {P}art {I}", url = "http://www.stat.umn.edu/geyer/5421/notes/expfam.pdf", } @misc{notes-5421-expfam-ii, author = "Charles James Geyer", year = "2023", title = "Stat 5421 Lecture Notes: Completion of Exponential Families", url = "http://www.stat.umn.edu/geyer/5421/notes/infinity.html", } @misc{notes-3701-mcmc-bayes, author = "Geyer, Charles James", year = "2020", title = "Stat 3701 Lecture Notes: Bayesian Inference via {M}arkov Chain {M}onte {C}arlo ({MCMC})", url = "http://www.stat.umn.edu/geyer/3701/notes/mcmc-bayes.html", } @article{fisher1922, author = "Ronald Aylmer Fisher", year = "1922", title = "On the mathematical foundations of theoretical statistics", journal = "Philosophical Transactions of the Royal Society of London, Series A", volume = "222", pages = "309--368", } @article{aster1, author = "Charles James Geyer and Stuart Wagenius and Ruth Geyer Shaw", year = "2007", title = "Aster Models for Life History Analysis", journal = "Biometrika", volume = "94", pages = "415--426", url = "https://doi.org/10.1093/biomet/asm030", doi = "10.1093/biomet/asm030", } @article{wald, author = {Abraham Wald}, year = {1949}, title = {Note on the Consistency of the Maximum Likelihood Estimate}, journal = {Annals of Mathematical Statistics}, volume = {20}, pages = {595--601}, URL = {http://www.jstor.org/stable/2236315}, } @article{geyer-thompson, AUTHOR = {Charles James Geyer and Elizabeth Alison Thompson}, TITLE = {Constrained {M}onte {C}arlo maximum likelihood for dependent data (with discussion)}, JOURNAL = {Journal of the Royal Statistical Society, Series B}, VOLUME = {54}, YEAR = {1992}, PAGES = {657--699}, DOI = {10.1111/j.2517-6161.1992.tb01443.x}, } @article{geyer-mcmcla, author = "Charles James Geyer", year = "1994", title = "On the Convergence of {M}onte {C}arlo Maximum Likelihood Calculations", journal = "Journal of the Royal Statistical Society, Series B", volume = "56", pages = "261--274", doi = "10.1111/j.2517-6161.1994.tb01976.x", } @misc{notes-8501-points, author = "Charles James Geyer", year = "2020", title = "Stat 8501 Lecture Notes: Spatial Point Processes", url = "http://www.stat.umn.edu/geyer/8501/points.pdf", } @misc{notes-8501-lattice, author = "Charles James Geyer", year = "2020", title = "Stat 8501 Lecture Notes: Spatial Lattice Processes", url = "http://www.stat.umn.edu/geyer/8501/lattice.pdf", } @misc{notes-5102, author = "Charles James Geyer", year = "2016", title = "Statistics 5102 (Geyer, Fall 2016) Slides", url = "http://www.stat.umn.edu/geyer/5102/slides/", } @misc{notes-8112-expfam, author = "Charles James Geyer", year = "2013", title = "Asymptotics of Exponential Families", url = "http://www.stat.umn.edu/geyer/8112/notes/expfam.pdf", } @incollection{geyer-no-n, author = "Charles James Geyer", year = "2013", title = "Asymptotics of Maximum Likelihood without the {LLN} or {CLT} or Sample Size Going to Infinity", editor = "G. L. Jones and X. Shen", booktitle = "Advances in Modern Statistical Theory and Applications: A Festschrift in honor of Morris L. Eaton", publisher = " Institute of Mathematical Statistics", address = "Hayward, CA", pages = "1-24", doi = "10.1214/12-IMSCOLL1001", } @book{rockafellar, AUTHOR = {Rockafellar, R. Tyrrell}, TITLE = {Convex Analysis}, PUBLISHER = {Princeton University Press}, ADDRESS = {Princeton}, YEAR = {1970}, } @book{rockafellar-wets, AUTHOR = {Rockafellar, R. Tyrrell and Wets, Roger J.-B.}, TITLE = {Variational Analysis}, PUBLISHER = {Springer-Verlag}, ADDRESS = {Berlin}, YEAR = {1998}, NOTE = {Corrected printings contain extensive changes. We used the third corrected printing, 2010.}, } @phdthesis{geyer-thesis, author = "Charles James Geyer", year = {1990}, title = {Likelihood and Exponential Families}, school = {University of Washington}, url = {http://purl.umn.edu/56330}, } @article{aster3, author = "Ruth Geyer Shaw and Charles James Geyer", year = "2010", title = "Inferring Fitness Landscapes", journal = "Evolution", volume = "64", pages = "2510--2520", doi = "10.1111/j.1558-5646.2010.01010.x", } @misc{notes-8931-aster, author = "Charles James Geyer", year = "2018", title = "Statistics 8931 (Geyer, Fall 2018) Slides", url = "http://www.stat.umn.edu/geyer/8931aster/slides/", } @book{agresti, author = "Alan Agresti", year = "2013", title = "Categorical Data Analysis", publisher = "John Wiley & Sons", address = "Hoboken, NJ", } @article{aster1, author = "Charles James Geyer and Stuart Wagenius and Ruth Geyer Shaw", year = "2007", title = "Aster Models for Life History Analysis", journal = "Biometrika", volume = "94", pages = "415--426", } @manual{aster-package, author = "Charles James Geyer", year = "2021", title = "R package \texttt{aster}: Aster Models, version 1.1-2", url = "http://cran.r-project.org/package=aster", } @manual{rcdd-package, author = {Charles James Geyer and Glen D. Meeden and Komei Fukuda}, year = {2021}, title = {R package \texttt{rcdd}: Computational Geometry, version 1.4}, url = "http://cran.r-project.org/package=rcdd", } @manual{llmdr-package, author = {Charles James Geyer}, year = {2022}, title = {R package \texttt{llmdr}: Log-Linear Models Done Right, version 0.1}, url = "http://github.com/cjgeyer/llmdr/", } @manual{glmbb-package, author = {Charles James Geyer}, year = {2020}, title = {R package \texttt{glmbb}: All Hierarchical or Graphical Models for Generalized Linear Model, version 0.5-1}, url = "http://cran.r-project.org/package=glmbb", } @Manual{clpapi-package, author = {Gabriel Gelius-Dietrich}, year = {2021}, title = {R package \texttt{clpAPI}: R Interface to C API of COIN-or Clp, version 1.3.1}, url = {https://CRAN.R-project.org/package=clpAPI}, } @Manual{glpkapi-package, author = {Gabriel Gelius-Dietrich}, year = {2021}, title = {R package \texttt{glpkAPI}: R Interface to C API of GLPK, version 1.3.3}, url = {https://CRAN.R-project.org/package=glpkAPI}, } @Manual{gmp-package, author = {Antoine Lucas and Immanuel Scholz and Rainer Boehme and Sylvain Jasson and Martin Maechler}, year = {2021}, title = {R package \texttt{gmp}: Multiple Precision Arithmetic, version 0.6-2.1}, url = {https://CRAN.R-project.org/package=gmp}, } @Manual{glmbb-package, author = {Charles James Geyer}, year = {2020}, title = {R package \texttt{glmbb}: All Hierarchical or Graphical Models for Generalized Linear Model, version 0.5-1}, url = {https://CRAN.R-project.org/package=glmbb}, } @Manual{alabama-package, author = {Ravi Varadhan}, year = {2015}, title = {R package \texttt{alabama}: Constrained Nonlinear Optimization, version 2015.3-1}, url = {https://CRAN.R-project.org/package=alabama}, } @Manual{numderiv-package, author = {Paul Gilbert and Ravi Varadhan}, year = {2019}, title = {R package \texttt{numDeriv}: Accurate Numerical Derivatives, version 2016.8-1.1}, url = {https://CRAN.R-project.org/package=numDeriv}, } @Manual{sfsmisc-package, author = {Martin Maechler}, year = {2021}, title = {R package \texttt{sfsmisc}: Utilities from 'Seminar fuer Statistik' {ETH} Zurich, version 1.1-12}, url = {https://CRAN.R-project.org/package=sfsmisc}, } @Book{mass-book, author = {W. N. Venables and B. D. Ripley}, year = {2002}, title = {Modern Applied Statistics with S}, edition = {Fourth}, publisher = {Springer}, address = {New York}, url = {https://www.stats.ox.ac.uk/pub/MASS4/}, note = {This is the book that R package \texttt{MASS} implements computing for.} } @manual{mass-package, author = {W. N. Venables and B. D. Ripley}, year = {2021}, title = {R package \texttt{MASS}: Support Functions and Datasets for Venables and Ripley's {MASS}, version 7.3-54}, url = {https://CRAN.R-project.org/package=MASS}, } @manual{nnet-package, author = {W. N. Venables and B. D. Ripley}, year = {2021}, title = {R package \texttt{nnet}: Feed-Forward Neural Networks and Multinomial Log-Linear Models, version 7.3-16}, url = {https://CRAN.R-project.org/package=nnet}, } @manual{rmarkdown-package, author = {J. J. Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone}, year = {2021}, title = {R package \texttt{rmarkdown}: Dynamic Documents for R, version 2.11}, url = {https://rmarkdown.rstudio.com}, } @book{rmarkdown-book, author = {Yihui Xie and J. J. Allaire and Garrett Grolemund}, year = {2018}, title = {R Markdown: The Definitive Guide}, publisher = {Chapman and Hall/CRC}, url = {https://bookdown.org/yihui/rmarkdown}, } @book{rmarkdown-cookbook, author = {Yihui Xie and Christophe Dervieux and Emily Riederer}, year = {2020}, title = {R Markdown Cookbook}, publisher = {Chapman and Hall/CRC}, url = {https://bookdown.org/yihui/rmarkdown-cookbook}, } @article{halmos-savage, author = "Paul R. Halmos and Leonard J. Savage", year = "1949", title = "Application of the {R}adon-{N}ikodym theorem to the theory of sufficient statistics", journal = "Annals of Mathematical Statistics", volume = "20", pages = "225--241", } @article{neyman, author = "Jerzy Neyman", year = "1935", title = "Sur un teorema concernente le cosiddette statistiche sufficienti", journal = "Giornale dell'Istituto Italiano degli Attuari", volume = {6}, pages = {320--334}, note = {The title translates to "On a theorem concerning so-called sufficient statistics"}, } @incollection{geyer-points, AUTHOR = {Charles James Geyer}, TITLE = {Likelihood inference for spatial point processes}, BOOKTITLE = {Stochastic Geometry: Likelihood and Computation}, EDITOR = {O. E. Barndorff-Nielsen and W. S. Kendall and M. N. M. van Lieshout}, PAGES = {79--140}, PUBLISHER = {Chapman \& Hall/CRC}, ADDRESS = {Boca Raton, FL}, YEAR = {1999}, } @book{agresti, author = {Agresti, Alan}, title = {Categorical Data Analysis}, edition = {third}, publisher = {John Wiley and Sons}, address = {Hoboken, NJ}, year = {2013}, } @article{geyer-condors, author = {Charles James Geyer and Oliver A. Ryder and L. G. Chemnick and Elizabeth Alison Thompson}, year = {1993}, title = {Analysis of relatedness in the {C}alifornia condors from DNA fingerprints}, journal = {Molecular Biology and Evolution}, volume = {10}, pages = {571--589}, doi = "10.1093/oxfordjournals.molbev.a040035", } @article{diaconis-ylvisaker, author = {Diaconis, P. and Ylvisaker, D.}, year = {1979}, title = {Conjugate priors for exponential families}, journal = {Annals of Statistics}, volume = {7}, pages = {269--281}, } @incollection{geyer-mcmc-intro, author = {Charles James Geyer}, year = {2011}, title = {Introduction to {MCMC}}, booktitle = {Handbook of {M}arkov Chain {M}onte {C}arlo}, editor = {S. P. Brooks and A. E. Gelman and G. L. Jones and X. L. Meng}, publisher = {Chapman \& Hall/CRC}, address = {Boca Raton}, pages = {3--48}, url = {https://www.mcmchandbook.net/HandbookChapter1.pdf}, } @BOOK{brown, AUTHOR = {Lawrence D. Brown}, YEAR = {1986}, TITLE = {Fundamentals of Statistical Exponential Families with Applications in Statistical Decision Theory}, PUBLISHER = {Institute of Mathematical Statistics}, ADDRESS = {Hayward, CA}, } @article{eck-geyer, author = {Daniel J. Eck and Charles James Geyer}, year = {2021}, title = {Computationally efficient likelihood inference in exponential families when the maximum likelihood estimator does not exist}, journal = {Electronic Journal of Statistics}, volume = {15}, pages = {2105--2156}, doi = {10.1214/21-EJS1815}, } @article{kass-raftery, author = {Robert E. Kass and Adrian E. Raftery}, year = {1995}, title = {Bayes Factors}, journal = {Journal of the American Statistical Association}, volume = {90}, pages = {773--795}, doi = {10.1080/01621459.1995.10476572}, } @article{raftery, author = {Adrian E. Raftery}, year = {1986}, title = {A Note on Bayes Factors for Log-Linear Contingency Table Models with Vague Prior Information}, journal = {Journal of the Royal Statistical Society, Series B}, volume = {48}, pages = {249--250}, doi = {10.1111/j.2517-6161.1986.tb01408.x}, } @article{schwarz, author = {Gideon Schwarz}, year = {1978}, title = {Estimating the Dimension of a Model}, journal = {Annals of Statistics}, volume = {6}, pages = {461--464}, doi = {10.1214/aos/1176344136}, } @article{cavanaugh-neath, author = {Joseph E. Cavanaugh and Andrew A. Neath}, year = {1999}, title = {Generalizing the derivation of the {Schwarz} information criterion}, journal = {Communications in Statistics --- Theory and Methods}, volume = {28}, pages = {49-66}, doi = {10.1080/03610929908832282}, } @article{neath-cavanaugh, author = {Andrew A. Neath and Joseph E. Cavanaugh}, year = {2012}, title = {The {Bayesian} information criterion: background, derivation, and applications}, journal = {WIREs Computational Statistics}, volume = {4}, pages = {199--203}, }