Script started on Sat 17 Sep 2005 02:06:36 PM CDT snowbank$ export R_PAPERSIZE=letter snowbank$ export R_BROWSER=firefox snowbank$ ./configure --prefix=/APPS/Foo/Alpha64 --with-lapack checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu loading site script './config.site' loading build specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... found checking for working autoconf... found checking for working automake... found checking for working autoheader... found checking for working makeinfo... found checking for gawk... gawk checking for egrep... grep -E checking whether ln -s works... yes checking for ranlib... ranlib checking for bison... bison -y checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for less... /usr/bin/less checking for perl... /usr/bin/perl checking whether perl version is at least 5.004... yes checking for dvips... /usr/bin/dvips checking for tex... /usr/bin/tex checking for latex... /usr/bin/latex checking for makeindex... /usr/bin/makeindex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeinfo... /usr/bin/makeinfo checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip using default browser ... firefox checking for acroread... /usr/X11R6/bin/acroread checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking whether gcc needs -traditional... no checking how to run the C preprocessor... gcc -E checking for g77... g77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether g77 accepts -g... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc... /usr/x86_64-suse-linux/bin/ld checking if the linker (/usr/x86_64-suse-linux/bin/ld) is GNU ld... yes checking for /usr/x86_64-suse-linux/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognise dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ranlib... (cached) ranlib checking for strip... strip checking if gcc static flag works... yes checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/x86_64-suse-linux/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for g77 option to produce PIC... -fPIC checking if g77 PIC flag -fPIC works... yes checking if g77 supports -c -o file.o... yes checking whether the g77 linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking whether makeinfo version is at least 4.7... yes checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking for dlfcn.h... (cached) yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking fpu_control.h usability... yes checking fpu_control.h presence... yes checking for fpu_control.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking ieee754.h usability... yes checking ieee754.h presence... yes checking for ieee754.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for strings.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long long... yes checking size of long long... 8 checking for long double... yes checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using gcc -MM checking whether gcc supports -c -o FILE.lo... yes checking how to get verbose linking output from g77... -v checking for Fortran libraries of g77... -L/usr/local/lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 -lfrtbegin -lg2c -lm -lgcc_s checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/local/lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, extra underscore checking whether g77 appends underscores to external names... yes checking whether mixed C/Fortran code can be run... yes checking whether g77 and gcc agree on int and double... yes checking whether g77 and gcc agree on double complex... yes checking whether g77 supports -c -o FILE.lo... yes checking whether g++ accepts -M for generating dependencies... yes checking whether g++ supports -c -o FILE.lo... yes checking whether C runtime needs -D__NO_MATH_INLINES... no checking for xmkmf... /usr/X11R6/bin/xmkmf checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking for access... yes checking for chdir... yes checking for expm1... yes checking for fcntl... yes checking for finite... yes checking for fseeko... yes checking for ftello... yes checking for ftruncate... yes checking for getcwd... yes checking for getgrgid... yes checking for getpwuid... yes checking for getuid... yes checking for hypot... yes checking for isascii... yes checking for log1p... yes checking for matherr... yes checking for mkdtemp... yes checking for mkfifo... yes checking for popen... yes checking for putenv... yes checking for realpath... yes checking for rint... yes checking for setenv... yes checking for strcoll... yes checking for stat... yes checking for strerror... yes checking for strptime... yes checking for symlink... yes checking for system... yes checking for times... yes checking for unsetenv... yes checking whether isfinite is declared... no checking whether isnan is declared... yes checking for finite... (cached) yes checking for isnan... yes checking whether isfinite is declared... (cached) no checking whether isnan is declared... (cached) yes checking whether you have IEEE 754 floating-point arithmetic... yes checking for nl_langinfo and CODESET... yes checking for acosh... yes checking for asinh... yes checking for atanh... yes checking for snprintf... yes checking for strdup... yes checking for strncasecmp... yes checking for vsnprintf... yes checking whether acosh is declared... yes checking whether asinh is declared... yes checking whether atanh is declared... yes checking whether snprintf is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking whether vsnprintf is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for __setfpucw... no checking for working calloc... yes checking for working finite... yes checking for working log... yes checking for working log1p... yes checking for working strptime... no checking whether ftell works correctly on files opened for append... yes checking whether C99 double complex is supported... checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking for cexp... yes checking for clog... yes checking for csqrt... yes checking for cpow... yes checking for ccos... yes checking for csin... yes checking for ctan... yes checking for cacos... yes checking for casin... yes checking for catan... yes checking for ccosh... yes checking for csinh... yes checking for ctanh... yes checking for cacosh... yes checking for casinh... yes checking for catanh... yes checking whether C99 double complex is compatible with Rcomplex... yes yes checking for cblas_cdotu_sub in vecLib framework... no checking for sgemm_... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes checking whether double complex BLAS can be used... yes checking for zgeev_... no checking for zgeev_ in -llapack... yes checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking for mbrtowc... yes checking for mbstowcs... yes checking for wcrtomb... yes checking for wcscoll... yes checking for wcsftime... yes checking for wcstombs... yes checking for wcswidth... yes checking for wctrans... yes checking for wcwidth... yes checking whether wcwidth is declared... no checking whether wcswidth is declared... no checking for wctrans_t... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv() accepts "UTF-8" and "latin1"... yes checking for iconvlist... no checking for X... libraries /usr/X11R6/lib64, headers /usr/X11R6/include checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes using X11 ... yes checking for KeySym... yes checking for CFStringGetSystemEncoding in CoreFoundation framework... no checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... /usr/lib64/tclConfig.sh checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... no checking /usr/include/tcl8.4/generic/tcl.h usability... no checking /usr/include/tcl8.4/generic/tcl.h presence... no checking for /usr/include/tcl8.4/generic/tcl.h... no checking /usr/include/tcl8.4/tcl.h usability... no checking /usr/include/tcl8.4/tcl.h presence... no checking for /usr/include/tcl8.4/tcl.h... no checking /usr/include/tcl.h usability... yes checking /usr/include/tcl.h presence... yes checking for /usr/include/tcl.h... yes checking for tk.h... no checking for BSD networking... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking for main in -lz... yes checking if libpng version >= 1.0.5... yes checking for png_create_write_struct in -lpng... yes checking rpc/types.h usability... yes checking rpc/types.h presence... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR support... yes checking whether zlib support needs to be compiled... yes checking mmap support for zlib... yes checking whether bzip2 support needs to be compiled... yes checking whether PCRE support needs to be compiled... yes checking whether leap seconds are treated according to POSIX... yes checking for setitimer... yes checking for lpr... lpr checking for paperconf... false checking for java... /usr/lib/jvm/jre/bin/java checking for javac... /APPS/jdk1.5.0/bin/javac checking whether Java interpreter works... yes checking for Java environment... in /usr/lib/jvm/jre checking for recommended packages... yes checking whether NLS is requested... yes checking whether make sets $(MAKE)... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for strerror in -lcposix... no checking for signed... yes checking for inline... inline checking for off_t... (cached) yes checking for long long... (cached) yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for inttypes.h... yes checking for stdint.h... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for getpagesize... yes checking for working mmap... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking whether integer division by zero raises SIGFPE... yes checking for unsigned long long... yes checking for inttypes.h... yes checking whether the inttypes.h PRIxNN macros are broken... no checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for ld used by GCC... /usr/x86_64-suse-linux/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) is GNU ld... yes checking for shared library run path origin... done checking for ptrdiff_t... yes checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for limits.h... (cached) yes checking for locale.h... (cached) yes checking nl_types.h usability... yes checking nl_types.h presence... yes checking for nl_types.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for getcwd... (cached) yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... (cached) yes checking for mempcpy... yes checking for munmap... yes checking for putenv... (cached) yes checking for setenv... (cached) yes checking for setlocale... yes checking for snprintf... (cached) yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for wcslen... yes checking for __argz_count... yes checking for __argz_stringify... yes checking for __argz_next... yes checking for __fsetlocking... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... no checking whether getc_unlocked is declared... yes checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for bison... bison checking version of bison... 1.875, ok checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/html/search/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating m4/Makefile config.status: creating po/Makefile.in config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/bzip2/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/pcre/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/extra/zlib/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/modules/vfonts/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/COMPILE config.status: creating src/scripts/INSTALL config.status: creating src/scripts/REMOVE config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rdconv config.status: creating src/scripts/Rprof config.status: creating src/scripts/SHLIB config.status: creating src/scripts/Sd2Rd config.status: creating src/scripts/build config.status: creating src/scripts/check config.status: creating src/scripts/f77 config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tests/Native/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing default-1 commands config.status: creating po/POTFILES config.status: creating po/Makefile config.status: executing stamp-h commands R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /APPS/Foo/Alpha64 C compiler: gcc -g -O2 C++ compiler: g++ -g -O2 Fortran compiler: g77 -g -O2 Interfaces supported: X11 External libraries: readline, BLAS(generic), LAPACK(generic) Additional capabilities: PNG, JPEG, iconv, MBCS, NLS Options enabled: R profiling Recommended packages: yes snowbank$ make make[1]: Entering directory `/APPS/Foo/src/R-alpha/m4' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/APPS/Foo/src/R-alpha/m4' make[1]: Entering directory `/APPS/Foo/src/R-alpha/tools' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/APPS/Foo/src/R-alpha/tools' make[1]: Entering directory `/APPS/Foo/src/R-alpha/doc' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/scripts' creating src/scripts/R.fe make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/scripts' make[2]: Entering directory `/APPS/Foo/src/R-alpha/doc/html' make[3]: Entering directory `/APPS/Foo/src/R-alpha/doc/html/search' make[3]: Leaving directory `/APPS/Foo/src/R-alpha/doc/html/search' make[2]: Leaving directory `/APPS/Foo/src/R-alpha/doc/html' make[2]: Entering directory `/APPS/Foo/src/R-alpha/doc/manual' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/APPS/Foo/src/R-alpha/doc/manual' make[1]: Leaving directory `/APPS/Foo/src/R-alpha/doc' make[1]: Entering directory `/APPS/Foo/src/R-alpha/etc' make[1]: Leaving directory `/APPS/Foo/src/R-alpha/etc' make[1]: Entering directory `/APPS/Foo/src/R-alpha/share' make[1]: Leaving directory `/APPS/Foo/src/R-alpha/share' make[1]: Entering directory `/APPS/Foo/src/R-alpha/src' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/scripts' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/scripts' make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/scripts' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/include' mkdir -p -- ../../include make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/include/R_ext' make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/include' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/extra' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/bzip2' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/bzip2' making blocksort.d from blocksort.c making bzlib.d from bzlib.c making compress.d from compress.c making crctable.d from crctable.c making decompress.d from decompress.c making huffman.d from huffman.c making randtable.d from randtable.c make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/bzip2' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/bzip2' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c blocksort.c -o blocksort.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c bzlib.c -o bzlib.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c compress.c -o compress.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c crctable.c -o crctable.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c decompress.c -o decompress.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c huffman.c -o huffman.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c randtable.c -o randtable.o rm -f libbz2.a ar cr libbz2.a blocksort.o bzlib.o compress.o crctable.o decompress.o huffman.o randtable.o ranlib libbz2.a make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/bzip2' make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/bzip2' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/pcre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dftables.c -o dftables.o gcc -L/usr/local/lib64 -o dftables dftables.o ./dftables chartables.h make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/pcre' making pcre_compile.d from pcre_compile.c making pcre_config.d from pcre_config.c making pcre_dfa_exec.d from pcre_dfa_exec.c making pcre_exec.d from pcre_exec.c making pcre_fullinfo.d from pcre_fullinfo.c making pcre_get.d from pcre_get.c making pcre_globals.d from pcre_globals.c making pcre_info.d from pcre_info.c making pcre_maketables.d from pcre_maketables.c making pcre_ord2utf8.d from pcre_ord2utf8.c making pcre_printint.d from pcre_printint.c making pcre_refcount.d from pcre_refcount.c making pcre_study.d from pcre_study.c making pcre_tables.d from pcre_tables.c making pcre_try_flipped.d from pcre_try_flipped.c making pcre_ucp_findchar.d from pcre_ucp_findchar.c making pcre_valid_utf8.d from pcre_valid_utf8.c making pcre_version.d from pcre_version.c making pcre_xclass.d from pcre_xclass.c make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/pcre' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/pcre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_compile.c -o pcre_compile.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_config.c -o pcre_config.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_dfa_exec.c -o pcre_dfa_exec.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_exec.c -o pcre_exec.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_fullinfo.c -o pcre_fullinfo.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_get.c -o pcre_get.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_globals.c -o pcre_globals.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_info.c -o pcre_info.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_maketables.c -o pcre_maketables.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_ord2utf8.c -o pcre_ord2utf8.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_printint.c -o pcre_printint.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_refcount.c -o pcre_refcount.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_study.c -o pcre_study.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_tables.c -o pcre_tables.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_try_flipped.c -o pcre_try_flipped.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_ucp_findchar.c -o pcre_ucp_findchar.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_valid_utf8.c -o pcre_valid_utf8.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_version.c -o pcre_version.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre_xclass.c -o pcre_xclass.o rm -f libpcre.a ar cr libpcre.a pcre_compile.o pcre_config.o pcre_dfa_exec.o pcre_exec.o pcre_fullinfo.o pcre_get.o pcre_globals.o pcre_info.o pcre_maketables.o pcre_ord2utf8.o pcre_printint.o pcre_refcount.o pcre_study.o pcre_tables.o pcre_try_flipped.o pcre_ucp_findchar.o pcre_valid_utf8.o pcre_version.o pcre_xclass.o ranlib libpcre.a make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/pcre' make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/pcre' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/zlib' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/zlib' making adler32.d from adler32.c making compress.d from compress.c making crc32.d from crc32.c making deflate.d from deflate.c making gzio.d from gzio.c making infback.d from infback.c making inffast.d from inffast.c making inflate.d from inflate.c making inftrees.d from inftrees.c making trees.d from trees.c making uncompr.d from uncompr.c making zutil.d from zutil.c make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/zlib' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/zlib' gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c adler32.c -o adler32.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c compress.c -o compress.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c crc32.c -o crc32.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c deflate.c -o deflate.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c gzio.c -o gzio.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c infback.c -o infback.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c inffast.c -o inffast.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c inflate.c -o inflate.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c inftrees.c -o inftrees.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c trees.c -o trees.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c uncompr.c -o uncompr.o gcc -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c zutil.c -o zutil.o rm -f libz.a ar cr libz.a adler32.o compress.o crc32.o deflate.o gzio.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o ranlib libz.a make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/zlib' make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/zlib' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/extra/intl' make[3]: Nothing to be done for `R'. make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra/intl' make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/extra' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/appl' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/appl' making approx.d from approx.c making bakslv.d from bakslv.c making binning.d from binning.c making cpoly.d from cpoly.c making cumsum.d from cumsum.c making fft.d from fft.c making fmin.d from fmin.c making integrate.d from integrate.c making interv.d from interv.c making lbfgsb.d from lbfgsb.c making loglin.d from loglin.c making lowess.d from lowess.c making machar.d from machar.c making maxcol.d from maxcol.c making massdist.d from massdist.c making pretty.d from pretty.c making rcont.d from rcont.c making rowsum.d from rowsum.c making splines.d from splines.c making stem.d from stem.c making strsignif.d from strsignif.c making tabulate.d from tabulate.c making uncmin.d from uncmin.c making zeroin.d from zeroin.c make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/appl' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c approx.c -o approx.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c bakslv.c -o bakslv.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c binning.c -o binning.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c cpoly.c -o cpoly.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c cumsum.c -o cumsum.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c fft.c -o fft.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c fmin.c -o fmin.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c lbfgsb.c -o lbfgsb.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c loglin.c -o loglin.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c lowess.c -o lowess.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c machar.c -o machar.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c massdist.c -o massdist.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rcont.c -o rcont.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rowsum.c -o rowsum.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c splines.c -o splines.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c stem.c -o stem.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c strsignif.c -o strsignif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c tabulate.c -o tabulate.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c uncmin.c -o uncmin.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c zeroin.c -o zeroin.o g77 -g -O2 -c ch2inv.f -o ch2inv.o g77 -g -O2 -c chol.f -o chol.o g77 -g -O2 -c dchdc.f -o dchdc.o g77 -g -O2 -c dpbfa.f -o dpbfa.o g77 -g -O2 -c dpbsl.f -o dpbsl.o g77 -g -O2 -c dpoco.f -o dpoco.o g77 -g -O2 -c dpodi.f -o dpodi.o g77 -g -O2 -c dpofa.f -o dpofa.o g77 -g -O2 -c dposl.f -o dposl.o g77 -g -O2 -c dqrdc.f -o dqrdc.o g77 -g -O2 -c dqrdc2.f -o dqrdc2.o g77 -g -O2 -c dqrls.f -o dqrls.o g77 -g -O2 -c dqrsl.f -o dqrsl.o g77 -g -O2 -c dqrutl.f -o dqrutl.o g77 -g -O2 -c dsvdc.f -o dsvdc.o g77 -g -O2 -c dtrco.f -o dtrco.o g77 -g -O2 -c dtrsl.f -o dtrsl.o g77 -g -O2 -c eigen.f -o eigen.o g77 -g -O2 -c lminfl.f -o lminfl.o rm -f libappl.a ar cr libappl.a approx.o bakslv.o binning.o cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o loglin.o lowess.o machar.o maxcol.o massdist.o pretty.o rcont.o rowsum.o splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o lminfl.o ranlib libappl.a make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/appl' make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/appl' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/nmath' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/nmath' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c expm1.c -o expm1.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c signrank.c -o signrank.o rm -rf libnmath.a ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o pnf.o pnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/nmath' make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/nmath' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/unix' config.status: creating src/unix/Makefile make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/unix' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/unix' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/unix' making dynload.d from dynload.c making edit.d from edit.c making stubs.d from stubs.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c making aqua.d from aqua.c make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/unix' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c edit.c -o edit.o gcc -I. -I../../src/include -I../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c stubs.c -o stubs.o gcc -I. -I../../src/include -I../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c X11.c -o X11.o gcc -I. -I../../src/include -I../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c aqua.c -o aqua.o rm -rf libunix.a ar cr libunix.a dynload.o edit.o stubs.o system.o sys-unix.o sys-std.o X11.o aqua.o ranlib libunix.a make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/unix' make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/unix' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/main' config.status: creating src/main/Makefile make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/main' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/main' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/main' making CConverters.d from CConverters.c making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making apply.d from apply.c making arithmetic.d from arithmetic.c making apse.d from apse.c making array.d from array.c making attrib.d from attrib.c making base.d from base.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cov.d from cov.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making deriv.d from deriv.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making fourier.d from fourier.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making identical.d from identical.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making model.d from model.c making names.d from names.c making objects.d from objects.c making optim.d from optim.c making optimize.d from optimize.c making options.d from options.c making par.d from par.c making paste.d from paste.c making pcre.d from pcre.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making random.d from random.c making regex.d from regex.c making registration.d from registration.c making relop.d from relop.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making size.d from size.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making unique.d from unique.c making util.d from util.c making version.d from version.c making vfonts.d from vfonts.c making Rmain.d from Rmain.c making Rembedded.d from Rembedded.c making alloca.d from alloca.c making acosh.d from acosh.c making asinh.d from asinh.c making atanh.d from atanh.c making snprintf.d from snprintf.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c making vsnprintf.d from vsnprintf.c make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/main' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/main' gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c Rmain.c -o Rmain.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c CConverters.c -o CConverters.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c CommandLineArgs.c -o CommandLineArgs.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c Rdynload.c -o Rdynload.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c Renviron.c -o Renviron.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c RNG.c -o RNG.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c apply.c -o apply.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c arithmetic.c -o arithmetic.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c apse.c -o apse.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c array.c -o array.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c attrib.c -o attrib.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c base.c -o base.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c bind.c -o bind.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c builtin.c -o builtin.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c character.c -o character.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c coerce.c -o coerce.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c colors.c -o colors.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c complex.c -o complex.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c connections.c -o connections.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c context.c -o context.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c cov.c -o cov.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c cum.c -o cum.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dcf.c -o dcf.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c datetime.c -o datetime.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c debug.c -o debug.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c deparse.c -o deparse.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c deriv.c -o deriv.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dotcode.c -o dotcode.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dounzip.c -o dounzip.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c dstruct.c -o dstruct.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c duplicate.c -o duplicate.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c engine.c -o engine.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c envir.c -o envir.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c errors.c -o errors.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c eval.c -o eval.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c format.c -o format.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c fourier.c -o fourier.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c gevents.c -o gevents.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c gram.c -o gram.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c gram-ex.c -o gram-ex.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c graphics.c -o graphics.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c identical.c -o identical.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c internet.c -o internet.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c iosupport.c -o iosupport.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c lapack.c -o lapack.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c list.c -o list.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c logic.c -o logic.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c main.c -o main.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c mapply.c -o mapply.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c match.c -o match.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c memory.c -o memory.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c model.c -o model.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c names.c -o names.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c objects.c -o objects.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c optim.c -o optim.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c optimize.c -o optimize.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c options.c -o options.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c par.c -o par.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c paste.c -o paste.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c pcre.c -o pcre.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c platform.c -o platform.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c plot.c -o plot.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c plot3d.c -o plot3d.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c plotmath.c -o plotmath.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c print.c -o print.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c printarray.c -o printarray.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c printvector.c -o printvector.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c printutils.c -o printutils.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c qsort.c -o qsort.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c random.c -o random.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c regex.c -o regex.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c registration.c -o registration.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c relop.c -o relop.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c saveload.c -o saveload.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c scan.c -o scan.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c seq.c -o seq.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c serialize.c -o serialize.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c size.c -o size.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c sort.c -o sort.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c source.c -o source.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c split.c -o split.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c sprintf.c -o sprintf.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c startup.c -o startup.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c subassign.c -o subassign.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c subscript.c -o subscript.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c subset.c -o subset.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c summary.c -o summary.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c sysutils.c -o sysutils.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c unique.c -o unique.o unique.c: In function `cshash': unique.c:1141: warning: cast from pointer to integer of different size gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c util.c -o util.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c version.c -o version.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c vfonts.c -o vfonts.o g77 -g -O2 -c xxxpr.f -o xxxpr.o gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lblas -lg2c -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -ldl -lm make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/main' mkdir -p -- /APPS/Foo/src/R-alpha/bin/exec mkdir -p -- /APPS/Foo/src/R-alpha/lib make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/main' make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/main' make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/main' make[2]: Entering directory `/APPS/Foo/src/R-alpha/src/modules' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/X11' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/X11' making dataentry.d from dataentry.c making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/X11' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/X11' gcc -I. -I../../../src/include -I../../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c dataentry.c -o dataentry.lo gcc -I. -I../../../src/include -I../../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c devX11.c -o devX11.lo gcc -I. -I../../../src/include -I../../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rotated.c -o rotated.lo gcc -I. -I../../../src/include -I../../../src/include -I/usr/X11R6/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c rbitmap.c -o rbitmap.lo gcc -shared -L/usr/local/lib64 -o R_X11.so dataentry.lo devX11.lo rotated.lo rbitmap.lo -lSM -lICE -L/usr/X11R6/lib64 -lX11 -ljpeg -lpng -lz make[5]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/X11' mkdir -p -- /APPS/Foo/src/R-alpha/modules make[5]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/X11' make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/X11' make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/X11' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/internet' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/internet' making Rsock.d from Rsock.c making internet.d from internet.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/internet' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Rsock.c -o Rsock.lo gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c internet.c -o internet.lo gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanoftp.c -o nanoftp.lo gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanohttp.c -o nanohttp.lo gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sock.c -o sock.lo gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sockconn.c -o sockconn.lo gcc -shared -L/usr/local/lib64 -o internet.so Rsock.lo internet.lo nanoftp.lo nanohttp.lo sock.lo sockconn.lo make[5]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/internet' make[5]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/internet' make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/internet' make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/internet' make[3]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/lapack' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/lapack' making Lapack.d from Lapack.c make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/lapack' make[4]: Entering directory `/APPS/Foo/src/R-alpha/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Lapack.c -o Lapack.lo gcc -shared -L/usr/local/lib64 -o lapack.so Lapack.lo -llapack -lblas -lg2c -lm -lgcc_s /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/bin/ld: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a(dgecon.i): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a: could not read symbols: Bad value collect2: ld returned 1 exit status make[4]: *** [lapack.so] Error 1 make[4]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/lapack' make[3]: *** [R] Error 2 make[3]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules/lapack' make[2]: *** [R] Error 1 make[2]: Leaving directory `/APPS/Foo/src/R-alpha/src/modules' make[1]: *** [R] Error 1 make[1]: Leaving directory `/APPS/Foo/src/R-alpha/src' make: *** [R] Error 1 snowbank$ cat /etc/SuSE-release SuSE Linux 9.3 (x86-64) VERSION = 9.3 snowbank$ uname -a Linux snowbank 2.6.11.4-20a-smp #1 SMP Wed Mar 23 21:52:37 UTC 2005 x86_64 x86_64 x86_64 GNU/Linux snowbank$ gcc --version gcc (GCC) 3.3.5 20050117 (prerelease) (SUSE Linux) Copyright (C) 2003 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. snowbank$ exit exit Script done on Sat 17 Sep 2005 02:14:35 PM CDT Script started on Sat 17 Sep 2005 02:18:07 PM CDT snowbank$ locate lapack /usr/lib64/liblapack.a /usr/lib64/liblapack.so.3 /usr/lib64/liblapack.so.3.0.0 /usr/lib64/python2.4/site-packages/Numeric/lapack_lite.so /usr/local/lib/liblapack.so.3 /usr/share/doc/packages/lapack /usr/share/doc/packages/lapack/README /usr/share/man/man3/lapack.3.gz /usr/share/man/man3/lsame-lapack.3.gz snowbank$ exit exit Script done on Sat 17 Sep 2005 02:18:24 PM CDT Script started on Sat 17 Sep 2005 04:25:50 PM CDT snowbank$ cd src/modules/lapack snowbank$ gcc -shared -o lapack.so Lapack.lo -llapack -lblas -lg2c -lm -lgcc_s /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/bin/ld: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a(dgecon.i): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a: could not read symbols: Bad value collect2: ld returned 1 exit status snowbank$ locate lapack /usr/lib64/liblapack.a /usr/lib64/liblapack.so.3 /usr/lib64/liblapack.so.3.0.0 /usr/lib64/python2.4/site-packages/Numeric/lapack_lite.so /usr/local/lib/liblapack.so.3 /usr/share/doc/packages/lapack /usr/share/doc/packages/lapack/README /usr/share/man/man3/lapack.3.gz /usr/share/man/man3/lsame-lapack.3.gz snowbank$ gcc -shared -o lapack.so Lapack.lo /usr/lib64/liblapack.so.3 -lblas -l g2c -lm -lgcc_s snowbank$ exit exit Script done on Sat 17 Sep 2005 04:28:04 PM CDT Script started on Sat 17 Sep 2005 05:02:59 PM CDT snowbank$ file /usr/lib64/liblapack.* /usr/lib64/liblapack.a: current ar archive /usr/lib64/liblapack.so.3: symbolic link to `liblapack.so.3.0.0' /usr/lib64/liblapack.so.3.0.0: ELF 64-bit LSB shared object, AMD x86-64, version 1 (SYSV), stripped snowbank$ file /usr/local/lib/liblapack.* /usr/local/lib/liblapack.so.3: ELF 32-bit LSB shared object, Intel 80386, version 1 (SYSV), stripped snowbank$ file `type R` R: cannot open `R' (No such file or directory) is: cannot open `is' (No such file or directory) /APPS/32/bin/R: Bourne shell script text snowbank$ type R R is /APPS/32/bin/R snowbank$ R RHOME /APPS/32/lib/R snowbank$ /APPS/32[[[[[[[[ snowbank$ file /APPS/32/lib/R/bin/Rcmd /APPS/32/lib/R/bin/Rcmd: Bourne shell script text snowbank$ file /APPS/32/lib/R/bin/Rcm[[* /APPS/32/lib/R/bin/R: Bourne shell script text /APPS/32/lib/R/bin/Rcmd: Bourne shell script text /APPS/32/lib/R/bin/Rd2dvi: Bourne shell script text /APPS/32/lib/R/bin/Rd2txt: Bourne shell script text /APPS/32/lib/R/bin/Rdconv: perl script text /APPS/32/lib/R/bin/Rdiff: Bourne shell script text /APPS/32/lib/R/bin/REMOVE: Bourne shell script text /APPS/32/lib/R/bin/Rprof: perl script text snowbank$ ls /APPS/32/lib/R/bin/R /APPS/32/lib/R/bin/R snowbank$ s /APPS/32/lib/R/bin snowbank$ ls /APPS/32/lib/R/bin BATCH COMPILE f77 LINK R Rd2txt REMOVE SHLIB build config INSTALL mkinstalldirs Rcmd Rdconv Rprof texi2dvi check exec libtool pager Rd2dvi Rdiff Sd2Rd snowbank$ file /APPS/32/lib/R/bin/exec/R /APPS/32/lib/R/bin/exec/R: ELF 32-bit LSB executable, Intel 80386, version 1 (SYSV), for GNU/Linux 2.2.5, dynamically linked (uses shared libs), not stripped snowbank$ exi[[[ snowbank$ snowbank$ cd src/modules/lapack snowbank$ gcc -shared -v -o lapack.so Lapack.lo -llapack -lblas -lg2c -lm -lgcc_ s Reading specs from /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/specs Configured with: ../configure --enable-threads=posix --prefix=/usr --with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/share/man --enable-languages=c,c++,f77,objc,java,ada --disable-checking --libdir=/usr/lib64 --enable-libgcj --with-slibdir=/lib64 --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux Thread model: posix gcc version 3.3.5 20050117 (prerelease) (SUSE Linux) /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/collect2 --eh-frame-hdr -m elf_x86_64 -shared -o lapack.so /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/crti.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/crtbeginS.o -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 Lapack.lo -llapack -lblas -lg2c -lm -lgcc_s -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/crtendS.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/crtn.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/bin/ld: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a(dgecon.i): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a: could not read symbols: Bad value collect2: ld returned 1 exit status snowbank$ gcc -v -shared -o lapack.so Lapack.lo /usr/lib64/liblapack.so.3 -lblas -lg2c -lm -lgcc_s Reading specs from /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/specs Configured with: ../configure --enable-threads=posix --prefix=/usr --with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/share/man --enable-languages=c,c++,f77,objc,java,ada --disable-checking --libdir=/usr/lib64 --enable-libgcj --with-slibdir=/lib64 --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux Thread model: posix gcc version 3.3.5 20050117 (prerelease) (SUSE Linux) /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/collect2 --eh-frame-hdr -m elf_x86_64 -shared -o lapack.so /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/crti.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/crtbeginS.o -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/lib -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64 -L/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 Lapack.lo /usr/lib64/liblapack.so.3 -lblas -lg2c -lm -lgcc_s -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/crtendS.o /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/crtn.o snowbank$ exit exit Script done on Sat 17 Sep 2005 05:08:56 PM CDT