Script started on Sun 10 Apr 2005 09:33:08 PM CDT
oak$ PATH=$HOME/liocal/bin:$PATH
oak$ R --version
R 2.1.0 beta (2005-04-10).
Copyright (C) 2005 R Development Core Team

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the GNU
General Public License.  For more information about these matters,
see http://www.gnu.org/copyleft/gpl.html.
oak$ R CMD check mcmc
* checking for working latex ... OK
* using log directory '/APPS/WEB/httpd/htdocs/geyer/mcmc/package/mcmc.Rcheck'
* using R version 2.1.0, 2005-04-10 
* checking for file 'mcmc/DESCRIPTION' ... OK
* this is package 'mcmc' version '0.5'
* checking if this is a source package ... OK

* Installing *source* package 'mcmc' ...
** libs
gcc -I/HOME/faculty/charlie/local/lib/R/include  -I/usr/local/include   -fPIC  -g -O2 -c getListElement.c -o getListElement.o
gcc -I/HOME/faculty/charlie/local/lib/R/include  -I/usr/local/include   -fPIC  -g -O2 -c getScalarInteger.c -o getScalarInteger.o
gcc -I/HOME/faculty/charlie/local/lib/R/include  -I/usr/local/include   -fPIC  -g -O2 -c getScalarLogical.c -o getScalarLogical.o
gcc -I/HOME/faculty/charlie/local/lib/R/include  -I/usr/local/include   -fPIC  -g -O2 -c isAllFinite.c -o isAllFinite.o
gcc -I/HOME/faculty/charlie/local/lib/R/include  -I/usr/local/include   -fPIC  -g -O2 -c metrop.c -o metrop.o
gcc -I/HOME/faculty/charlie/local/lib/R/include  -I/usr/local/include   -fPIC  -g -O2 -c olbm.c -o olbm.o
gcc -shared -L/usr/local/lib -o mcmc.so getListElement.o getScalarInteger.o getScalarLogical.o isAllFinite.o metrop.o olbm.o   
** R
** inst
** help
 >>> Building/Updating help pages for package 'mcmc'
     Formats: text html latex example 
  metrop                            text    html    latex   example
  olbm                              text    html    latex   example
** building package indices ...
* DONE (mcmc)

* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking package dependencies ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating mcmc-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/APPS/WEB/httpd/htdocs/geyer/mcmc/package/mcmc.Rcheck/tests'
  Running 'logitbat.R'
  Comparing 'logitbat.Rout' to 'logitbat.Rout.save' ... OK
  Running 'logitfun.R'
  Comparing 'logitfun.Rout' to 'logitfun.Rout.save' ... OK
  Running 'logitidx.R'
  Comparing 'logitidx.Rout' to 'logitidx.Rout.save' ... OK
  Running 'logitmat.R'
  Comparing 'logitmat.Rout' to 'logitmat.Rout.save' ... OK
  Running 'logitsub.R'
  Comparing 'logitsub.Rout' to 'logitsub.Rout.save' ... OK
  Running 'logitvec.R'
  Comparing 'logitvec.Rout' to 'logitvec.Rout.save' ... OK
  Running 'logit.R'
  Comparing 'logit.Rout' to 'logit.Rout.save' ...39c39
< Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 
---
> Signif. codes:  0 `***' 0.001 `**' 0.01 `*' 0.05 `.' 0.1 ` ' 1 
 OK
  Running 'logitnegidx.R'
  Comparing 'logitnegidx.Rout' to 'logitnegidx.Rout.save' ... OK
  Running 'logitlogidx.R'
  Comparing 'logitlogidx.Rout' to 'logitlogidx.Rout.save' ... OK
  Running 'circle.R'
  Comparing 'circle.Rout' to 'circle.Rout.save' ... OK
  Running 'logitsubbat.R'
  Comparing 'logitsubbat.Rout' to 'logitsubbat.Rout.save' ... OK
  Running 'logitfunarg.R'
  Comparing 'logitfunarg.Rout' to 'logitfunarg.Rout.save' ... OK
make[1]: Leaving directory `/APPS/WEB/httpd/htdocs/geyer/mcmc/package/mcmc.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating mcmc-manual.tex ... OK
* checking mcmc-manual.tex ... OK

oak$ exit
exit

Script done on Sun 10 Apr 2005 09:35:57 PM CDT